Related Issues (20)
- Nf-core workflow version update HOT 1
- Subworkflow installation bug
- Update linting to support to changes introduced in `nf-schema` HOT 2
- ToDo: Refactor SyncedRepo class and its subclasses ModulesRepo and WorkflowRepo
- nf-core should support private repos that are not on GitHub HOT 2
- Using the nfcore/tools docker image gets permission denied now
- Pipelines create: fetch list of user repos to push the pipeline HOT 1
- [create]: different pipeline name validation for nf-core and custom pipelines
- [create]: Show org + repo name that will be created
- [create]: Add button to open the created repo
- Pipeline CI dependant of the template version
- [create]: Make textual tests pass locally
- Add link to docs in warning about missing GitHub authentication token
- `nf-core modules create` issue for external modules repositories
- Add nf-schema comment to the plugin import and sample sheet channel generation HOT 1
- `nf-core sync` will modify the template incorrectly if the pipeline prefix is uppercase HOT 2
- Improve error message when modules directory is not empty
- Lean down CLI for remote component repositories HOT 3
- Add pipeline nf-test tests
- Add native support for multiple `org_path` in modules and subworkflows directories HOT 2
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