Comments (1)
hey, I also tried the gitpod devcontainer for the raredisease pipeline and had some weird issues with running docker - the docker daemon was not running upon container start and needed to be started manually, then permission issues prevented us from running docker without sudo and when we run nextflow it doesn't allow us to use sudo. It would be nice to solve these issues. What is the intended use of the gitpod container, should the user gitpod
be able to run stuff directly? Is the conda environment supposed to be turned on always?
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Related Issues (20)
- Replace `check_max` with `resourceLimits`
- Renaming job name in linting comment workflow HOT 1
- Combining linting and linting-comment workflows
- Nf-core workflow version update HOT 1
- Subworkflow installation bug
- Update linting to support to changes introduced in `nf-schema` HOT 2
- ToDo: Refactor SyncedRepo class and its subclasses ModulesRepo and WorkflowRepo
- nf-core should support private repos that are not on GitHub HOT 2
- Using the nfcore/tools docker image gets permission denied now
- Pipelines create: fetch list of user repos to push the pipeline HOT 1
- [create]: different pipeline name validation for nf-core and custom pipelines
- [create]: Show org + repo name that will be created
- [create]: Add button to open the created repo
- Pipeline CI dependant of the template version
- [create]: Make textual tests pass locally
- Add link to docs in warning about missing GitHub authentication token
- `nf-core modules create` issue for external modules repositories
- Add nf-schema comment to the plugin import and sample sheet channel generation HOT 1
- `nf-core sync` will modify the template incorrectly if the pipeline prefix is uppercase HOT 2
- Improve error message when modules directory is not empty
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