Comments (3)
I think we should aim to stop people foot-gunning themselves wherever possible - it's part of the appeal of something like nf-core
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FWIW I have confirmed that names which start with a number or hyphen/dash cause errors:
- cause: Workflow definition syntax error -- A string identifier must be provided after the `workflow` keyword @ line 79, column 9.
workflow 2TEST {
- cause: Workflow definition syntax error -- A string identifier must be provided after the `workflow` keyword @ line 79, column 9.
workflow TEST-2 {
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I see this has been fixed in a PR, but I think it might need some refinement. Are we sure that names which start with a number are allowed? (Groovy/java variables can't and we use the name as the name of a workflow in nextflow).
Also is -
definitely now usable? I tried it previously (more than a year ago) and again some stuff in the template borked because of it in variable names.
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I see this has been fixed in a PR, but I think it might need some refinement. Are we sure that names which start with a number are allowed? (Groovy/java variables can't and we use the name as the name of a workflow in nextflow).
Also is
-
definitely now usable? I tried it previously (more than a year ago) and again some stuff in the template borked because of it in variable names.
If you make a pipeline and you never try to run it once I think you have bigger problems than the name of your pipeline.
from tools.
Related Issues (20)
- Lint for pipeline nf-test contents
- Use resource limits instead of setting process directives in nf-test configuration
- nf-core create fails on 2.14.2.dev0 HOT 1
- No nf-core modules found HOT 8
- lint fails missing variables that are present HOT 6
- Fail to send the completion email
- Move --migrate-pytest command to `module test` command group HOT 2
- Add process_high_memory to create/lint list HOT 1
- Manual include or exclude specific files in template
- Linting throws an error if hyphens appear in the name HOT 5
- `xx` is present as an output in meta.yml but not in main.nf HOT 1
- Test pipelines with Singularity & Conda
- Print test directory path in output from `nf-core test`
- modules linting: Check that version.yml has version of all items in `environment.yml`
- `nf-core sync` does not respect existing template config on dev branch
- MultiQC results not cacheable
- nf-core/tools download error HOT 5
- Lint for test data paths and produce a warning/error if the config map is used?
- Add `-w`, `--fail-warned` option to `nf-core schema lint`
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