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drpatelh avatar drpatelh commented on May 25, 2024

Thanks for posting this @heuermh Some more info would be useful though 😅 I am assuming you are running the dev version of the pipeline because that points to

viralrecon/main.nf

Line 3457 in 1779842

def smail_fields = [ email: email_address, subject: subject, email_txt: email_txt, email_html: email_html, projectDir: "$projectDir", mqcFile: mqc_report, mqcMaxSize: params.max_multiqc_email_size.toBytes() ]
as being the issue here. However, this is a little odd because the GitHub Actions CI tests are run in exactly the same way and passed on the last PR...

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heuermh avatar heuermh commented on May 25, 2024

Yep, am still in investigation mode, dev from git HEAD fails for me on OSX (#143) but not on linux (which succeeds but notes this issue).

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drpatelh avatar drpatelh commented on May 25, 2024

Ok. This is quite scary because the CI tests passed but do indeed show the same error you just reported https://github.com/nf-core/viralrecon/runs/1453984332#step:7:215 . Its because I changed the type of params.max_multiqc_email_size in nextflow.config from a Nextflow memory unit to a string to deal with standardising things for the new JSON schema 🤦

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drpatelh avatar drpatelh commented on May 25, 2024

This is the fix by the way:
https://github.com/nf-core/rnaseq/blob/bc5fc76f40b2da6082a854927184c9d6e5060393/lib/Completion.groovy#L83

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heuermh avatar heuermh commented on May 25, 2024

Fixed by #144

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