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Comments (9)

arose avatar arose commented on June 2, 2024

try this (from https://github.com/ipython/ipywidgets/blob/master/examples/notebooks/Widget%20Low%20Level.ipynb)

from notebook.nbextensions import install_nbextension
from notebook.services.config import ConfigManager

def install(user=False, symlink=False, enable=False):
    """Install the widget nbextension and optionally enable it.

    Parameters
    ----------
    user: bool
        Install for current user instead of system-wide.
    symlink: bool
        Symlink instead of copy (for development).
    """
    staticdir = pjoin(dirname(abspath(__file__)), 'static')
    install_nbextension(staticdir, destination='widgets', user=user, symlink=symlink)

    cm = ConfigManager()
    cm.update('notebook', {
        "load_extensions": {
            "widgets/notebook/js/extension": True,
        }
    })

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marscher avatar marscher commented on June 2, 2024

@arose This change actually makes it for the moment impossible to test the import statement in our preliminary conda recipe in omnia.md

The recipe simply imports nglview, which triggers the symlink creation. Can one circumvent this somehow?

===== testing package: nglview-0.4-py35_0 =====
import: u'nglview'
symlink /home/marscher/.local/share/jupyter/nbextensions/nglview -> /home/marscher/anaconda/envs/_test/lib/python3.5/site-packages/nglview/html/static
Traceback (most recent call last):
  File "/home/marscher/anaconda/conda-bld/test-tmp_dir/run_test.py", line 25, in <module>
    import nglview
  File "/home/marscher/anaconda/envs/_test/lib/python3.5/site-packages/nglview/__init__.py", line 447, in <module>
    install(symlink=True)
  File "/home/marscher/anaconda/envs/_test/lib/python3.5/site-packages/nglview/__init__.py", line 438, in install
    user=user, symlink=symlink)
  File "/home/marscher/anaconda/envs/_test/lib/python3.5/site-packages/notebook/nbextensions.py", line 204, in install_nbextension
    os.symlink(path, full_dest)
FileExistsError: [Errno 17] File exists: '/home/marscher/anaconda/envs/_test/lib/python3.5/site-packages/nglview/html/static' -> '/home/marscher/.local/share/jupyter/nbextensions/nglview'
TESTS FAILED: nglview-0.4-py35_0

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marscher avatar marscher commented on June 2, 2024

@arose you can find the conda recipe here: https://github.com/omnia-md/conda-recipes/tree/master/nglview

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arose avatar arose commented on June 2, 2024

Yeah, the symlink is more for development.

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hainm avatar hainm commented on June 2, 2024

Why does this cause error? I built the receipt for ambermd and got no problem importing it.

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marscher avatar marscher commented on June 2, 2024

Probably because you use a custom statement (python -c 'import nglview as nv') to perform the import while I use the built in import test from conda, which tries to symlink to the test environment.

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hainm avatar hainm commented on June 2, 2024

I see. Thanks.

Hai

On Feb 23, 2016, at 1:14 PM, Martin K. Scherer [email protected] wrote:

Probably because you use a custom statement (python -c 'import nglview as nv') to perform the import while I use the built in import test from conda, which tries to symlink to the test environment.


Reply to this email directly or view it on GitHub.

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arose avatar arose commented on June 2, 2024

Removed it in this PR #43

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hainm avatar hainm commented on June 2, 2024

@arose can we close this issue now?

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