Comments (2)
NBKingsley
commented on July 23, 2024
Bears room:
day 1 https://hackmd.io/EYDgxgjAzATFYFoYE4CGUEBZgwKwNQDYB2AMwQAYJlMQBTAEylwhFKA=?view#
day 2 https://hackmd.io/JwUwZmCMAm4LRmgDgMxwCzQExjkp0ArHNAOykCGYKkShWwARkA==?view#
day 3 https://hackmd.io/EwFgJghgjBBmwFpoAYBsCSwKwE4E4mViTFQHZYoBTAYwGYxksg==?view#
Day 4 https://hackmd.io/IYVgnCDMCMAMAcBaATAYwGYCNEBYBssApomJHgOyIjR6TIAmYq5kkwQA?view#
Day 5 https://hackmd.io/EYJgpgzGDGBswFpbQCYA4EBYAM0IODWQQEZgSBDFYCAdgoE41ag=?view#
Day 6 https://hackmd.io/IYIwxmwEwCwGYFoDMBTAjFBNgQcAbAJwwJwhpJqHrDAAMhQA?view#
Day 7 https://hackmd.io/KwNgZg7AphCcEFoJgIwBMEBYCGYBGCe2wKC22ATFGmMAAywV4DMQA===?view#
Variant calling revisited:
https://hackmd.io/IwUwxgTMDMBGCcBaEB2eLEBYwFYnrDEWgEMTNMJYAOAMxVhKA===?both
@HadrienG, can you think of any other HackMD files from the Bears room or other tutorials that I have missed???
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HadrienG
commented on July 23, 2024
@NBKingsley You got them all
Building and annotating your own de novo transcriptome (from this afternoon): https://hackmd.io/JwQwrG4MYgtATGA7ABlgFhQI3rEKATKWAMwIFMoBGJMAseANhKA=
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Related Issues (20)
- Overall thoughts on current status of materials HOT 3
- comments from review of day 1 and day 2 material
- link to ssh private key in angus/jetstream/login.md is to old dibsi slack, and not accessible
- Workflow diagrams
- navigation shortcut to TOC HOT 1
- for running command line blast, should format so no soft-wrap HOT 2
- md5sum HOT 1
- update CoC HOT 2
- md5sum error HOT 1
- switching between terminal tabs HOT 1
- trial run of new deseq2 material HOT 3
- Add challenge questions to the fastqc/trimmomatic lesson
- add a challenge problem to the salmon output HOT 1
- add conda commands to the table HOT 2
- Add inline comments to snakemake tutorial HOT 1
- Clean branches
- add memory resource in Intro_to_Clusters.md
- Typo(s) in conda lesson HOT 1
- add a license to the repo? HOT 4
- angus 2019 doc pages not rendering correctly HOT 1
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