ngthomas Goto Github PK

antibody-pairing

battleofgenotype

cbh21-protein-solubility-challenge

Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinformatics Hackathon 2021.

eca-shared

some source code that is shared between a number of my projects

informant

Eval credibility of facebook news post

marchwithus

mhc_compatibility

microhaplot

microhaplotype visualizer and analyzer

model_rna

RNA:RNA interactions are emerging as important in pathogenesis, yet this remains unexplored for novel SARS-CoV-2. Since the SARS-CoV2 transcriptome is available, I propose modeling potential RNA:RNA interactions using both accessibility profile and predicted secondary structure of the SARS-CoV-2 transcriptome. The main objective is to identify any novel pathogenic mechanisms, which may serve as potential targets for therapeutics. The output will be visualization of the most robust network of host-virus RNA:RNA interactions, plus possibly a pre-print or article and open-access tool available for other researchers.

ngthomas.github.io

optimal-ph

pedfac

A factor graph based MCMC pedigree sampler

pedvis

Simple R scripts to call Graphviz dot to draw pedigrees

pinksal_pedfac

pirepiper

protein-language-challenge

Copenhagen Bioinformatics Hackathon 2021 Protein Edition - Protein Language Challenge

public-ballpit

remembrance-1945

research

Read, Rate and Recommend scientific papers

rnftools

sturgeon_fluidigm