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analysis-workflows

Open workflow definitions for genomic analysis from MGI at WUSM.

bamsurgeon

tools for adding mutations to existing .bam files, used for testing mutation callers

bazi

生辰八字，五行，算命

bazi-1

python八字排盘软件。　子平真诠、耕寸集等经典八字教程。　丰富的八字案例。

bms038_analysis

Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also http://www.ioexplorer.org for interactive visuallization

clca_wgs

cnv_pipeline

cnvbench

Benchmarking of CNV calling tools

cpi1000_paper

ctdnatools

R package to work with ctDNA sequencing data

deeplearning_ai_books

deeplearning.ai（吴恩达老师的深度学习课程笔记及资源）

digital_life.com

digital_life.github.io

dragonstar2019

dynamotd

🚥 MOTD for your servers that shows the info you need, with semantic colors

ecotyper

EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

feline_project

fgbio

Tools for working with genomic and high throughput sequencing data.

fitclone

gistic2

Genomic Identification of Significant Targets in Cancer (GISTIC), version 2

hmftools

Various algorithms for analysing genomics data

hotspots

Identifying recurrent mutations in cancer

human_genomics_pipeline

A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

machine-learning-notes

My continuously updated Machine Learning, Probabilistic Models and Deep Learning notes and demos (2000+ slides) 我不间断更新的机器学习，概率模型和深度学习的讲义(2000+页)和视频链接

mpn_phylogenies_and_evolution

Code and documents for "Life histories of myeloproliferative neoplasm inferred from phylogenies"

mutationtimer

An R package to time somatic mutations

neutralitytestr

Testing a neutral evolution model on cancer sequencing data

ng2018_bioinformatics

ngs-filters

Filters for false-positive mutation calls in NGS

nickier.com