Comments (3)
@hanayik Do you (or whoever you think is best placed to test this) could check if that shows fine with NiiVue, so that we know if the issue is on ipyniivue's side?
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@christian-oreilly add_volume adds a voxel-based image (e.g. NIfTI, DICOM, NRRD). An STC file contains the per-vertex values for a mesh. So you would want to add your desired triangular mesh (e.g. left-hemisphere mesh) and then load your STC file as a layer attached to the mesh. Note that you can have multiple meshes open at once (e.g. left and right hemisphere simultaneously) each with its own layer(s). The mesh 4D live demo illustrates the process.
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Thanks @neurolabusc for this info. Right, that makes sense. I had in mind that these files embedded the meshes as other MNE structures do (like the source model and the forward model if I am not mistaken)... but you are right, they don't. I'll cycle back to this when I have a moment to try to finish the demo with ipyniivue given this info.
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Related Issues (20)
- ipyniivue installting correctly but viewer window not showing up
- a
- Graph features
- Add custom colormaps
- devDependency requirement on @jupyterlab/builder@^4.0.0
- load_meshes HOT 1
- Building documentation HOT 8
- Review code of NiiVue Jupyter notebook integration in IPyNiiVue HOT 4
- load_meshes does not add the mesh to self.meshes in MacOS and Linux HOT 5
- Restarting the kernel fails to destroy the NiiVue object
- jupyterlab 4 support HOT 4
- ENH: Integration with MNE-Python
- Possible to add overlays and/or possibly saving the whole scene as .html file to harddrive?
- Prototype of ipyniivue using anywidget HOT 7
- Project admin, milestones, and roadmap
- Priorities HOT 6
- ☂️ Volume HOT 9
- Better camel/snake scale conversion HOT 10
- Exposing `nv.saveScene` on the python side HOT 1
- Deleting big files HOT 2
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