Comments (3)
effigies
commented on September 17, 2024
1
Looks like that's been there since the beginning: 368bbc0
So this is an untested workflow. I guess I would just add in_reference to the inputnode and pass an appropriate reference. I'm not sure which direction is assumed to be the reference, but you could probably guess and check.
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psadil
commented on September 17, 2024
I'm a bit confused; is this workflow aiming to unwarp one of the elements of in_data or some other epi that is referred to by in_reference? It looks like it's designed to treat as a reference whichever file is first in in_data, based on this sort_pe node, but I'm not sure whether that's the one that should be unwarped.
FWIW, this is a version of the 3dqwarp workflow back when it was used by fmriprep
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psadil
commented on September 17, 2024
Aim is to have init_3dQwarp_wf outputs match the outputs from init_topup_wf
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