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Nikolai Karpov's Projects

editdistancek icon editdistancek

LMS algorithm for computing edit distance with SIMD optimizations

fp2015 icon fp2015

homework functional programming

herro icon herro

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1, Kit 14, Ultra-long (UL) reads.

rust-bio icon rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

whatshap icon whatshap

Read-based phasing of genomic variants, also called haplotype assembly

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