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bios201

Course material for "BIOS 201: Next-generation sequencing and applications"

correlation_outliers

Identifying outlier samples in situations with multiple data measurements per sample. Applied in gene expression outlier calling where each gene has measurements across many tissues.

eces490_metagenomics

A metagenomic analysis of sequenced microbiomes in healthy mice vs. DEN toxin injected, FLD induced mice on control and high fat diets

eces690-tutorial05

This is a tutorial on methods for handling high throughput sequencing data.

graph_genome_gene245

Code for term project in GENE 245, represent differences in allele frequencies between populations as reference graph

gtex_v8_rare_variant_figure_generation

Scripts to generate all main and supplementary figures in "Diverse transcriptomic signatures across human tissues identify functional rare genetic variation"

harvest-site

Website and documentation for The Harvest Stack

jekyll-docs-template

Jekyll template for documentation-based sites

localancestry

Calling local ancestry tracts with RFMix v1.5.4 and (optionally) validating global ancestry fractions with ADMIXTURE.

mpra-v2

predixcan

PrediXcan Project

r4ds-courses

redcap-repeat

Script for REDCap data dictionaries to support repeating fields and groups of fields.

varify-option-2