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animal-growth-models

This MATLAB script fits either a linear or hyperbolic function to time-series data (e.g., growth data).

atp-and-adp-diffusion-and-degradation-model

Mathematical model that describes ATP and ADP release through a cellular membrane injury and subsequent radial diffusion and degradation in the extracellular space.

bootstrap-4-github-pages

A Bootstrap 4 template project for Github Pages and Jekyll

calcium-signal-analyzer

Calcium signal processing algorithm for automated analysis of intracellular calcium responses

celegans.l2.cello

This is preprocessed and reanalyzed C. elegans L2 data from from Cao, et al. (2017) for input into VisCello.

cluster-rodent-activity

This MATLAB script takes activity data obtained from metabolic cages and clusters (k-mean algorithm) the data according to inherent differences in activity levels exhibited between cages. Output provides cluster memberships and cluster diagnostics and descriptive statistics.

easy-markdown-to-github-pages

Convert Markdown files in Github to a full website using Github Pages

ecotyper

growth-curve-analysis

This MATLAB script takes animal weights and analyzes the amount and kinetics of growth.

hallucination-susceptible-hopfield-network

The Hopfield network, a point attractor network, is modified here to investigate the behavior of the resting state challenged with varying degrees of noise.

lawson2020

metalab

Meta-analysis toolbox for basic research applications. Developed in MATLAB R2016b.

mikolajewicz-2024

qazi-2022

Analysis scripts used in Qazi et al. (2022)

scmiko

R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.

scpipeline

Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports

seurat

R toolkit for single cell genomics