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3dunetcnn

Keras 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation

basic_unet_example

An example project of how to use a U-Net for segmentation on medical images with PyTorch.

brain-tumor-segmentation-using-deep-neural-networks

Keras implementation of paper by the same name

brats-dmfnet

brats18-challege

Multimodal Brain Tumor Segmentation Challenge 2018

brats2018

Brats segmentation pytorch

brats2018-1

brats2018-tumor-segmentation

We provide DeepMedic and 3D UNet in pytorch for brain tumore segmentation. We also integrate location information with DeepMedic and 3D UNet by adding additional brain parcellation with original MR images.

brats2018-tumor-segmentation-1

We provide DeepMedic and 3D UNet in pytorch for brain tumore segmentation. We also integrate location information with DeepMedic and 3D UNet by adding additional brain parcellation with original MR images.

brats2018_nvnet

Implementation of NvNet

deepbrainseg

Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks

deeplab_v3

Tensorflow Implementation of the Semantic Segmentation DeepLab_V3 CNN

deepmedic

Efficient Multi-Scale 3D Convolutional Neural Network for Segmentation of 3D Medical Scans

deepresearch

This repository is the collection of research papers in Deep learning, computer vision and NLP.

detectron2

Detectron2 is FAIR's next-generation research platform for object detection and segmentation.

esfnet-pytorch

ESFNet-Pytorch

import-error

Using TensorFlow backend. --------------------------------------------------------------------------- ImportError Traceback (most recent call last) ~\Anaconda3\lib\site-packages\tensorflow\python\pywrap_tensorflow.py in <module> 57 ---> 58 from tensorflow.python.pywrap_tensorflow_internal import * 59 from tensorflow.python.pywrap_tensorflow_internal import __version__ ~\Anaconda3\lib\site-packages\tensorflow\python\pywrap_tensorflow_internal.py in <module> 27 return _mod ---> 28 _pywrap_tensorflow_internal = swig_import_helper() 29 del swig_import_helper ~\Anaconda3\lib\site-packages\tensorflow\python\pywrap_tensorflow_internal.py in swig_import_helper() 23 try: ---> 24 _mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description) 25 finally: ~\Anaconda3\lib\imp.py in load_module(name, file, filename, details) 241 else: --> 242 return load_dynamic(name, filename, file) 243 elif type_ == PKG_DIRECTORY: ~\Anaconda3\lib\imp.py in load_dynamic(name, path, file) 341 name=name, loader=loader, origin=path) --> 342 return _load(spec) 343 ImportError: DLL load failed: A dynamic link library (DLL) initialization routine failed. During handling of the above exception, another exception occurred: ImportError Traceback (most recent call last) <ipython-input-2-979e106fa729> in <module> ----> 1 from keras import backend as K ~\Anaconda3\lib\site-packages\keras\__init__.py in <module> 1 from __future__ import absolute_import 2 ----> 3 from . import utils 4 from . import activations 5 from . import applications ~\Anaconda3\lib\site-packages\keras\utils\__init__.py in <module> 4 from . import data_utils 5 from . import io_utils ----> 6 from . import conv_utils 7 8 # Globally-importable utils. ~\Anaconda3\lib\site-packages\keras\utils\conv_utils.py in <module> 7 from six.moves import range 8 import numpy as np ----> 9 from .. import backend as K 10 11 ~\Anaconda3\lib\site-packages\keras\backend\__init__.py in <module> ----> 1 from .load_backend import epsilon 2 from .load_backend import set_epsilon 3 from .load_backend import floatx 4 from .load_backend import set_floatx 5 from .load_backend import cast_to_floatx ~\Anaconda3\lib\site-packages\keras\backend\load_backend.py in <module> 87 elif _BACKEND == 'tensorflow': 88 sys.stderr.write('Using TensorFlow backend.\n') ---> 89 from .tensorflow_backend import * 90 else: 91 # Try and load external backend. ~\Anaconda3\lib\site-packages\keras\backend\tensorflow_backend.py in <module> 3 from __future__ import print_function 4 ----> 5 import tensorflow as tf 6 from tensorflow.python.framework import ops as tf_ops 7 from tensorflow.python.training import moving_averages ~\Anaconda3\lib\site-packages\tensorflow\__init__.py in <module> 22 23 # pylint: disable=g-bad-import-order ---> 24 from tensorflow.python import pywrap_tensorflow # pylint: disable=unused-import 25 26 from tensorflow._api.v1 import app ~\Anaconda3\lib\site-packages\tensorflow\python\__init__.py in <module> 47 import numpy as np 48 ---> 49 from tensorflow.python import pywrap_tensorflow 50 51 # Protocol buffers ~\Anaconda3\lib\site-packages\tensorflow\python\pywrap_tensorflow.py in <module> 72 for some common reasons and solutions. Include the entire stack trace 73 above this error message when asking for help.""" % traceback.format_exc() ---> 74 raise ImportError(msg) 75 76 # pylint: enable=wildcard-import,g-import-not-at-top,unused-import,line-too-long ImportError: Traceback (most recent call last): File "C:\Users\Administrator\Anaconda3\lib\site-packages\tensorflow\python\pywrap_tensorflow.py", line 58, in <module> from tensorflow.python.pywrap_tensorflow_internal import * File "C:\Users\Administrator\Anaconda3\lib\site-packages\tensorflow\python\pywrap_tensorflow_internal.py", line 28, in <module> _pywrap_tensorflow_internal = swig_import_helper() File "C:\Users\Administrator\Anaconda3\lib\site-packages\tensorflow\python\pywrap_tensorflow_internal.py", line 24, in swig_import_helper _mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description) File "C:\Users\Administrator\Anaconda3\lib\imp.py", line 242, in load_module return load_dynamic(name, filename, file) File "C:\Users\Administrator\Anaconda3\lib\imp.py", line 342, in load_dynamic return _load(spec) ImportError: DLL load failed: A dynamic link library (DLL) initialization routine failed.

ischemic-stroke-lesion-segmentation-by-deep-learning-isles-2015

ISLES 2015 (ISCHEMIC STROKE LESION SEGMENTATION)

isles2018

Code and models for the paper ISLES Challenge: U-shaped Convolution Neural Network with Dilated Convolution for 3D Stroke Lesion Segmentation

keras-brats-improved-unet3d

3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation

lenet-5

PyTorch implementation of LeNet-5 with live visualization

stroke-mri-segmentation

Development framework of the paper "Acute and sub-acute stroke lesion segmentation from multimodal MRI"

trixi

Manage your machine learning experiments with trixi - modular, reproducible, high fashion. An experiment infrastructure optimized for PyTorch, but flexible enough to work for your framework and your tastes.

unet-family

Paper and implementation of UNet-related model.

websocket-client

websocket client for python