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Nikolai Romashchenko's Projects

bifrost icon bifrost

Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs

ccl icon ccl

DESC Core Cosmology Library: cosmology routines with validated numerical accuracy

debruijn_seq icon debruijn_seq

Generates a de Bruijn sequence for an alphabet of given cardinality and given size of k-mers

hgvs icon hgvs

HGVS variant name parsing and generation

hpcourse icon hpcourse

Repository to store student's practical works on high performance computing course

mini-app-spam icon mini-app-spam

Alignment-free Phylogenetic Placement using filtered SPAced word Matches

pyfrost icon pyfrost

Python bindings for Bifrost with a NetworkX compatible API

rappas icon rappas

Rapid, Alignment-free, Phylogenetic Placement via Ancestral Seqeunces

scikit-bio icon scikit-bio

scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.

snakemake icon snakemake

This is the development home of the workflow management system Snakemake. For general information, see

vim-material icon vim-material

Vim colorscheme inspired by equinusocio's Material Theme.

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