nuno-agostinho Goto Github PK
Name: Nuno Agostinho
Type: User
Company: European Bioinformatics Institute | EMBL-EBI
Bio: Molecular Biologist & Computer Scientist 🧬👨🏻💻 Scientific Programmer at EMBL-EBI
Location: Cambridge, United Kingdom
Name: Nuno Agostinho
Type: User
Company: European Bioinformatics Institute | EMBL-EBI
Bio: Molecular Biologist & Computer Scientist 🧬👨🏻💻 Scientific Programmer at EMBL-EBI
Location: Cambridge, United Kingdom
GitHub Actions for the R community
Another Gtf/Gff Analysis Toolkit
Alternative splicing annotation for AnnotationHub
Alternative splicing event annotation for Human assembly (hg19)
Alternative splicing event annotation for Human assembly (hg38)
Docker to perform big matrix correlations
CLI tools for bioinformatics
Docker to run BWA for aligning sequences against a reference genome
Scripts to test CAPICE plugin in VEP
data access client
Distributed Task Queue (development branch)
Docker to run CIRI-AS for splicing quantification of circular RNA
Identification of candidate causal perturbations from differential gene expression data
EBI-wide Nextflow config file
Code for checking Ensembl databases during release production
File parsing and writing code for Ensembl
Language agnostic RESTful data access to Ensembl data over HTTP
The Ensembl Variation Perl API and SQL schema
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
The code to run an Ensembl website
Test VEP with new GTF/GFF3 annotation files
Benchmark impact of --regulatory on VEP annotation speed
R package to manage Celery task queues via Flower's REST API
Galaxy wrappers for NCBI BLAST+ and related BLAST tools.
Docker to run GDC Data Transfer Tool (gdc-client)
Insert Highcharter sparklines in DataTables (proof of concept for the Shiny R package)
Docker to run MISO for splicing quantification and analysis
Docker to run multiqc for combining bioinformatic log reports
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