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ajtao avatar ajtao commented on July 27, 2024

Hi, did you create a .runx file in which you define a LOGROOT? I would do so, and make the path absolute. Maybe try that.

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ollenordesjo avatar ollenordesjo commented on July 27, 2024

Yep, I tried to do so, and made the path absolute now as well. When running (on v.0.0.11), I'm getting something similar to this:

 python -m runx.runx sweep.yml -i
Copying codebase to /home/.../onordesjo/git/runxtest/sweep/economic-lyrebird_2021.07.13_13.17 ...
Traceback (most recent call last):
  File "/home/.../onordesjo/miniconda3/envs/sequences/lib/python3.8/runpy.py", line 192, in _run_module_as_main
    return _run_code(code, main_globals, None,
  File "/home/.../onordesjo/miniconda3/envs/sequences/lib/python3.8/runpy.py", line 85, in _run_code
    exec(code, run_globals)
  File "/home/.../onordesjo/miniconda3/envs/sequences/lib/python3.8/site-packages/runx/runx.py", line 402, in <module>
    main()
  File "/home/.../onordesjo/miniconda3/envs/sequences/lib/python3.8/site-packages/runx/runx.py", line 395, in main
    run_experiment(args.exp_yml)
  File "/home/.../onordesjo/miniconda3/envs/sequences/lib/python3.8/site-packages/runx/runx.py", line 390, in run_experiment
    run_yaml(experiment, runroot)
  File "/home/.../onordesjo/miniconda3/envs/sequences/lib/python3.8/site-packages/runx/runx.py", line 345, in run_yaml
    copy_code(logdir, runroot, code_ignore_patterns)
  File "/home/.../onordesjo/miniconda3/envs/sequences/lib/python3.8/site-packages/runx/runx.py", line 216, in copy_code
    copytree(runroot, tgt_code_dir, ignore=code_ignore_patterns)
  File "/home/.../onordesjo/miniconda3/envs/sequences/lib/python3.8/shutil.py", line 547, in copytree
    return _copytree(entries=entries, src=src, dst=dst, symlinks=symlinks,
  File "/home/.../onordesjo/miniconda3/envs/sequences/lib/python3.8/shutil.py", line 504, in _copytree
    raise Error(errors)
shutil.Error: [('/home/.../onordesjo/git/runxtest/sweep/economic-lyrebird_2021.07.13_13.17/code/sweep/economic-lyrebird_2021.07.13_13.17/code/sweep/economic-lyrebird_2021.07.13_13.17/code/sweep/economic-lyrebird_2021.07.13_13.17/code/sweep/economic-lyrebird_2021.07.13_13.17/code/sweep/economic-lyrebird_2021.07.13_13.17/code/sweep/economic-lyrebird_2021.07.13_13.17/code/sweep/economic-lyrebird_2021.07.13_13.17/code/sweep/economic-lyrebird_2021.07.13_13.17/code/sweep/economic-lyrebird_2021.07.13_13.17/code/sweep/economic-lyrebird_2021.07.13_13.17...
...
economic-lyrebird_2021.07.13_13.17/code/sweep'")]

from runx.

ajtao avatar ajtao commented on July 27, 2024

It's not clear to me why there's ... in your LOGROOT path. Maybe you could show your .runx file?

from runx.

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