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odinokov's Projects

adanet icon adanet

based on the article AdaNet- Adaptive Structural Learning of Artificial Neural Networks

amazon-sagemaker-examples icon amazon-sagemaker-examples

Example notebooks that show how to apply machine learning, deep learning and reinforcement learning in Amazon SageMaker

awesome-python icon awesome-python

A curated list of awesome Python frameworks, libraries, software and resources

bioinfscripts icon bioinfscripts

Bioinformatics scripts produced over the course of my work. Now maintained on GitLab.

brainfm icon brainfm

UNOFFICIAL python client for brain.fm

cfnome icon cfnome

cfNOMe toolkit. Includes tools for nucleosome occupancy studies as well as methylation deconvolution of cfDNA tissues-of-origin

chromosomeremapping icon chromosomeremapping

This script remaps chromosome names in genomic data based on a provided mapping file.

diffexpr icon diffexpr

Porting DESeq2 and DEXSeq into python via rpy2

gwas_auto_tagger icon gwas_auto_tagger

To tag GWAS studies from http://ftp.ebi.ac.uk/pub/databases/gwas/ according to synonyms of the ranked top leading causes of death

lncrna-disease-link icon lncrna-disease-link

Predicting lncRNA-disease associations in heterogeneous network based on deep learning method.

matrixdb icon matrixdb

The R script to extract all extracellular matrix related genes from http://matrixdb.univ-lyon1.fr/

nancorrmp icon nancorrmp

Parallel correlation calculation of big numpy arrays or pandas dataframes with NaNs and infs.

ncov icon ncov

nCoV exponential regression model (for cases in China)

nhanes icon nhanes

Scripts to download and aggregate NHANES data

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