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ofirr's Projects

clineage-simulation icon clineage-simulation

This simulates cell lineage using eSTGt, reconstructs the lineage tree based on the mutation table generated by the simulation, and finally outputs various comparison metrics between the simulation and reconstruction.

dask icon dask

Parallel computing with task scheduling

dojango icon dojango

dojo and django - the perfect couple

estgt icon estgt

eSTGt: A programming and simulation environment for population dynamics

ete icon ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

mouse-estg icon mouse-estg

eSTG scripts for sparse simulation of mouse development

mysql-server icon mysql-server

MySQL Server, the world's most popular open source database, and MySQL Cluster, a real-time, open source transactional database.

scipy icon scipy

Scipy library main repository

tmc_wrapper icon tmc_wrapper

pythonic wrapper for Tripletx MaxCut binary + usage example

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