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bigartm

Fast topic modeling platform

bigartm-book

Topic modeling with BigARTM: an interactive book

bigartm-install

CI validation of BigARTM installation procedures

book

comorment-ldsc-legacy

cppderivest

C++ port of "Adaptive Robust Numerical Differentiation"

dart

Dynamic Animation and Robotics Toolkit

docker-flask-api

Trying to learn from https://bpostance.github.io/posts/docker-fask-api/

eas_partitioned_ldscore

Partitioned LD Scores for the EAS population

egrm

fast-lmm

Python version of Factored Spectrally Transformed Linear Mixed Models

flask-on-docker

Flask + Docker

genesets

googletest

Google Test

gwas101

lava

lava-partitioning

Partitioning algorithm developed for LAVA

ldsc

LD Score Regression (LDSC)

ldsc-docker

ldsc_matlab

Matlab port of LD score regression (no practical use, just fun / learning)

libplinkio

A small C and Python library for reading PLINK genotype files.

mbsystem

Clone of http://www.ldeo.columbia.edu/res/pi/MB-System/

mbsystem-docker

Docker image for mbsystem

mixer

Causal Mixture Model for GWAS summary statistics

mixertest

opensnp

Scripts for analysis of openSNP dataset

plink-ng

A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Future development will revolve around critical extensions to the core file format (multiallelic variants, dosage, phase).

popcorn

Software for estimating correlation of trait effect sizes across populations

prsice

A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores

pyflow

A lightweight parallel task engine