ohsu-comp-bio Goto Github PK

aced-dictionary

Gen3 Data dictionary for ACED

alasql-console

ansible-role-kibana

Ansible Role - Kibana

anvil-fhir

FHIR schema for AnVIL projects

aracne

Wrapper scripts for Aracne-AP, "Network Reverse Engineering through AP inference of Mutual Information"

ashlar

ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

bam_readgroup_to_json

Extract a readgroup from a BAM, and write it as json

basic-illumination

ImageJ BaSiC shading correction for use with Ashlar

bcc

LabKey module for Brenden-Colson Center

beacon-team

GA4GH Beacon team repo

bergamot

bioapi-examples

biobambam-docker

bioconda-recipes

Conda recipes for the bioconda channel.

birdseed2vcf

Convert birdseed variant file with genotypes to a VCF file

birdsuite

bridge2ai-jupyter

Docker Image for JupyterHub with restricted download and tensorflow/pytorch

cbkdl

CBKDL Informatics Wiki

ccc-docker

Docker Compose configuration for setting up the CCC

ccc_api

Protobuf Declaration of the CCC API

ccc_client

Python client to enable some basic interactions with CCC services

ccc_import

This contains a command line tool for importing/registering metadata with the CCC

ccc_status

Utility for querying workflow status and metadata on CCC.

cd-group-ansible

configuration for CD Group infrastructure.

cedar-gwas

cellpose_segmentation

Galaxy tool for for cell and nucleus segmentation using Cellpose

ceph-docker-compose

ckan

CKAN is an open-source DMS (data management system) for powering data hubs and data portals. CKAN makes it easy to publish, share and use data. It powers datahub.io, catalog.data.gov and data.gov.uk among many other sites.

ckan-docker

Developing and deploying CKAN with Docker

ckanext-lire

CKAN extension for managing datasets relationships