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23andmetoreporter

Converts 23AndMe raw to a really funky QuantStudio file

clinrisk-modules

ClinRisk risk prediction algorithms for use in clinical care.

doi

nofe.me doi resolution and reader rendering

dwgsim

Whole Genome Simulator for Next-Generation Sequencing

fhh

This is the repository for the HTML5 version of the Family Health History Tool

flask-swaggerui

This library provides python Flask utilities and static assets for rendering Swagger UI.

flywheel

Object mapper for Amazon's DynamoDB

gnxp.nofe.me

gulag-bot

helix-python

Python module to access Helix's API

hsdn

Maps symptom and disease terms to MeSH IDs

intervar

A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

patrons

Patron of Science page for kickstarter backers

personal-drugs

Our PG browser

pharmcat_ddna

ddna pharmcat

post_imputation_pipeline

Pipeline to add genotyped SNPs back post-imputation (specifically, post-imputation with BEAGLE v4 or later)

pynnotator

This is a Genome Annotation Framework developed with the goal of annotating VCF files (Exomes or Genomes) from patients with Mendelian Disorders.

reader-for-lens

The reader functionality meant for the Lens HTML

sets

stringmlst

Fast k-mer based tool for multi locus sequence typing (MLST)

subsamplefastq

A simple program that will "randomly" sub sample a fastq file.

synthea

Synthetic Patient Population Simulator

tasktiger

Python task queue. Because celery is gross.

variantsearch

search for variants (variantsearch.com)

weasyprint_lambda

Dockerfile image that builds AWS Lambda Layer with native libraries for running WeasyPrint HTML to PDF renderer