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antspy

A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.

aorta_houghcircle

Generating aorta measurements from pulmonary artery view MRI using hough circles

bidsify

Tool to convert raw MRI datasets to BIDS-compatible datasets

bocd

Python implementation of Bayesian online changepoint detection

changepoint-detection

Online Change-point Detection Algorithm for Multi-Variate Data: Applications on Human/Robot Demonstrations.

dcm2bids

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

deep-disconnectome

This repository contains the trained 3D U-Net model and the code to compute a deep-disconnecotme from a binary lesion file.

etl-uk-biobank

ETL UK-Biobank

nestedcvml_matlab

Machine Learning methods implementing nested cross validation in Matlab

oct-converter

Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.

pipeline

presentations

pyradiomics

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics

softx-d-21-00221

onlineBcp: An R Package for Online Change Point Detection using a Bayesian Approach. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711022000140

tcpdbench

The Turing Change Point Detection Benchmark: An Extensive Benchmark Evaluation of Change Point Detection Algorithms on real-world data

ukb-cardiac-mri

Weakly Supervised MRI Series Classification for the UK Biobank

ukb-connectomics

This repository will host scripts used to map structural and functional brain connectivity matrices for the UK biobank dataset.

ukbb-mri-sseg

UKBB MRI semantic segmentation for Abdominal Dixon and other modalities

ukbb_cardiac

Some code for processing and analysing UK Biobank cardiac MR images.