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bracken

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

deduplifer

Reduces a highly divergent set of diploid alleles to a single haplome

dissolve_tech_demo

Game tech demo using automata

enabrowsertools

A collection of scripts to assist in the retrieval of data from the ENA Browser

epigenetic_change_networks

Scripts for constructing network views of gene differentials from various data sources

eur_gbp_bigatr_triggers

Development of trading strategy for GBP/USD using partial EUR/USD correlations as predictors

highdimensionalsignatures

Intersects long-lmer protein sequence space with flexibility masks to generate biologically informative high dimensional signatures

hlsl_automata

Pixel shaders for experimenting with cellular automata

hollowscaffolds

Rewrites Genome Scaffolds with Ns via 2-MA coverage intersect

kmc

Fast and frugal disk based k-mer counter

literature_networks

Scripts and tutorial documents developed to teach the fundamentals of literature networks

nanochrome_scaffolder

Combines low depth 10x Chromium linkage with low depth nanopore long-reads to scaffold difficult assemblies

nucleosome-positioning-analysis-tools

Post-processing and stats for chromatin structures

renoo

Rapid Epxloration of Novel Organism 'Omics (RENOO)

rna_assembly_context_graphs

Mapping transcripts directly to genomic DNAseq read pileups for divergent assembly sense-making

software_renderer

Implementation of 3D shading and rasterization methods from scratch (demo)

useful_r_and_perl_scripts

Just a place to stash Bioinformatics related perl scripts that may come in handy

wilcoxon-test