olopade-lab Goto Github PK

alignment

batchqc

Analyze batch effects

cell-type-deconvolution

Scripts to perform cell type deconvolution using RNAseq Transcript per million gene expression data

comiri

covidprognosis

COVID deterioration prediction based on chest X-ray radiographs via MoCo-trained image representations

dicognito

A library and command line tool for anonymizing DICOM files

duke-dbt-data_forked

Forked repository of duke-dbt-data

esvit

EsViT: Efficient self-supervised Vision Transformers

fusionsimulation

gene-fusion

geomx_deconvolution

hla_analysis

hrd_analysis

immunedeconv_rnaseq

indel-filtering

lightning-bolts

Toolbox of models, callbacks, and datasets for AI/ML researchers.

mae

PyTorch implementation of MAE https//arxiv.org/abs/2111.06377

meerkat_docker

mirai

This repository was used to develop Mirai, the risk model described in: Towards Robust Mammography-Based Models for Breast Cancer Risk.

mirai_validation

Repository for validating Mirai, a DL mammography based breast cancer risk prediction tool, in the ChiMEC cohort.

msn

Masked Siamese Networks for Label-Efficient Learning (https://arxiv.org/abs/2204.07141)

mutational-signatures

outcomes-by-age-race-in-chimec

Elizabeth Terman SRP 2021 research project, focusing on young black women in ChiMEC

pam50

Algorithm for Molecular Sub-typing

polyfuse

pycox

Survival analysis with PyTorch

query-gdc

radiogenomics

simsiam

PyTorch implementation of SimSiam https//arxiv.org/abs/2011.10566

spatialdecon_github