Comments (1)
sfchen
commented on May 29, 2024
AfterQC treats 1024 as 1K, while others treat 1000 as 1K, that's the difference.
I will revise AfterQC to treat 1000 as 1K.
BTW, I suggest you to use fastp instead of AfterQC. fastp is much better than AfterQC, and 10X faster.
See https://github.com/OpenGene/fastp
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Related Issues (20)
- Removal of PCR/RNA primers HOT 1
- Tool to keep reads where all bases are above a specific quality score. HOT 2
- output gzipped data HOT 3
- ValueError: max() arg is an empty sequence HOT 3
- AterQc HOT 2
- Report
- output files are truncated
- filter only for poly-X but nothing else HOT 9
- Afterqc with pypy HOT 3
- Issue with overlap analysis HOT 4
- Read length distributon after processing HOT 7
- question about AfterQC/preprocesser.py
- Float division by zero in circledetector.py
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- Error despite creating env with 2.7 in conda
- Remove overrepresented sequences
- String index out of range. HOT 1
- bubble
- My bioconda install Python version
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