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editorialbot avatar editorialbot commented on July 17, 2024

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@editorialbot generate pdf

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editorialbot avatar editorialbot commented on July 17, 2024
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- None

MISSING DOIs

- 10.5194/amt-14-1111-2021 may be a valid DOI for title: MUCCnet: Munich urban carbon column network
- No DOI given, and none found for title: Advancing Urban Greenhouse Gas Monitoring: Develop...
- No DOI given, and none found for title: Integration and calibration of non-dispersive infr...
- No DOI given, and none found for title: Why trees grow at night
- 10.1145/1031495.1031522 may be a valid DOI for title: Hardware design experiences in ZebraNet
- 10.1109/mic.2006.26 may be a valid DOI for title: Deploying a wireless sensor network on an active v...
- 10.5194/egusphere-egu21-15182 may be a valid DOI for title: Stand-alone low-cost sensor network in the inner c...
- No DOI given, and none found for title: FROST Server
- 10.1017/cbo9780511586491.007 may be a valid DOI for title: polars
- No DOI given, and none found for title: Grafana
- No DOI given, and none found for title: TimescaleDB
- No DOI given, and none found for title: ThingsBoard
- No DOI given, and none found for title: ThingSpeak
- No DOI given, and none found for title: paho.mqtt.java
- No DOI given, and none found for title: paho.mqtt.c
- No DOI given, and none found for title: paho.mqtt.python
- No DOI given, and none found for title: MQTT.js
- No DOI given, and none found for title: PostgreSQL
- 10.1021/es404610t may be a valid DOI for title: High density ozone monitoring using gas sensitive ...
- 10.1109/ewsn.2005.1462004 may be a valid DOI for title: Design of an application-cooperative management sy...
- No DOI given, and none found for title: How did Swiss forest trees respond to the hot summ...
- 10.21105/joss.03075 may be a valid DOI for title: Thing Directory: Simple and lightweight registry o...
- No DOI given, and none found for title: Ivy

INVALID DOIs

- None

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editorialbot avatar editorialbot commented on July 17, 2024

Software report:

github.com/AlDanial/cloc v 1.90  T=0.10 s (1163.9 files/s, 312604.1 lines/s)
--------------------------------------------------------------------------------
Language                      files          blank        comment           code
--------------------------------------------------------------------------------
JSON                             10              0              0          20663
TypeScript                       41            336             17           3908
Python                           18            521            305           2055
YAML                              4              4              0            655
Markdown                         19            219              0            599
SQL                               2             70             49            347
TeX                               1              0              0            201
JavaScript                        6              4             77            122
Bourne Again Shell                7             25             43             98
CSS                               2             27              0             81
JSX                               1              0              5             77
TOML                              2             11              0             70
Dockerfile                        1              8              4             17
--------------------------------------------------------------------------------
SUM:                            114           1225            500          28893
--------------------------------------------------------------------------------

Commit count by author:

   125	Moritz Makowski
   101	Felix BΓΆhm

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editorialbot avatar editorialbot commented on July 17, 2024

Paper file info:

πŸ“„ Wordcount for paper.md is 1138

βœ… The paper includes a Statement of need section

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editorialbot avatar editorialbot commented on July 17, 2024

License info:

βœ… License found: MIT License (Valid open source OSI approved license)

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editorialbot avatar editorialbot commented on July 17, 2024

πŸ‘‰πŸ“„ Download article proof πŸ“„ View article proof on GitHub πŸ“„ πŸ‘ˆ

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editorialbot avatar editorialbot commented on July 17, 2024

Five most similar historical JOSS papers:

BoboCEP: a Fault-Tolerant Complex Event Processing Engine for Edge Computing in Internet of Things
Submitting author: @r3w0p
Handling editor: @vissarion (Active)
Reviewers: @abhishektiwari, @mahsan321
Similarity score: 0.6588

OpenTera: A Framework for Telehealth Applications
Submitting author: @doumdi
Handling editor: @galessiorob (Active)
Reviewers: @Rocsg, @tmickleydoyle
Similarity score: 0.6557

MAHOS: Measurement Automation Handling and Orchestration System
Submitting author: @ktahar
Handling editor: @arfon (Active)
Reviewers: @sidihamady, @aquilesC
Similarity score: 0.6550

SampleDB: A sample and measurement metadata database
Submitting author: @FlorianRhiem
Handling editor: @arfon (Active)
Reviewers: @stuartcampbell, @dvanic
Similarity score: 0.6532

Pyra: Automated EM27/SUN Greenhouse Gas Measurement Software
Submitting author: @patrickjaigner
Handling editor: @AoifeHughes (Retired)
Reviewers: @nmstreethran, @arthur-e
Similarity score: 0.6527

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

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kthyng avatar kthyng commented on July 17, 2024

Hi @empicano and thanks for your submission! I am looking for some specific items to make sure your submission fits our requirements at a high level (not at the more detailed review level) before moving on to finding an editor or putting this on our waitlist if no relevant editors are available. I'll comment over time as I have a chance to go through them:

In the meantime, please take a look at the comments above ⬆️ from the editorialbot to address any DOI, license, or paper issues if you're able (there may not be any), or suggest reviewers. For reviewers, please suggest 5 reviewers from the database listed above or your own (non-conflicted) extended network. Their github handles are most useful to receive but please don't use "@" to reference them since it will prematurely ping them.

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empicano avatar empicano commented on July 17, 2024

Hi there @kthyng, thank you for taking this on!

As reviewers, I suggest: yadudoc, sarathsp06, ChristopherHaydenTodd, nmstreethran, shahchiragh, and achanda

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empicano avatar empicano commented on July 17, 2024

@editorialbot commands

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editorialbot avatar editorialbot commented on July 17, 2024

Hello @empicano, here are the things you can ask me to do:


# List all available commands
@editorialbot commands

# Get a list of all editors's GitHub handles
@editorialbot list editors

# Adds a checklist for the reviewer using this command
@editorialbot generate my checklist

# Set a value for branch
@editorialbot set joss-paper as branch

# Run checks and provide information on the repository and the paper file
@editorialbot check repository

# Check the references of the paper for missing DOIs
@editorialbot check references

# Generates the pdf paper
@editorialbot generate pdf

# Generates a LaTeX preprint file
@editorialbot generate preprint

# Get a link to the complete list of reviewers
@editorialbot list reviewers

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empicano avatar empicano commented on July 17, 2024

@editorialbot check references

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editorialbot avatar editorialbot commented on July 17, 2024
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.5194/amt-14-1111-2021 is OK
- 10.5194/amt-13-3815-2020 is OK
- 10.1111/nph.17552 is OK
- 10.1145/1031495.1031522 is OK
- 10.1109/MIC.2006.26 is OK
- 10.5194/egusphere-egu21-15182 is OK
- 10.1021/es404610t is OK
- 10.1109/EWSN.2005.1462004 is OK
- 10.12854/erde-2019-420 is OK
- 10.21105/joss.03075 is OK

MISSING DOIs

- No DOI given, and none found for title: Advancing Urban Greenhouse Gas Monitoring: Develop...
- No DOI given, and none found for title: FROST Server
- 10.1017/cbo9780511586491.007 may be a valid DOI for title: polars
- No DOI given, and none found for title: Grafana
- No DOI given, and none found for title: TimescaleDB
- No DOI given, and none found for title: ThingsBoard
- No DOI given, and none found for title: ThingSpeak
- No DOI given, and none found for title: PostgreSQL
- No DOI given, and none found for title: Ivy

INVALID DOIs

- None

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kthyng avatar kthyng commented on July 17, 2024

@empicano I am going to ping the editorial board to have them see if this is in scope for JOSS, mainly in terms of whether this counts as "research software". This will probably take a few weeks, thanks for your patience.

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kthyng avatar kthyng commented on July 17, 2024

@editorialbot query scope

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editorialbot avatar editorialbot commented on July 17, 2024

Submission flagged for editorial review.

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empicano avatar empicano commented on July 17, 2024

Thank you for the update! I hope that I'm allowed to give some input:

Our research group builds sensor networks that measure environmental data like air quality and CO2. This data can e.g. be used to validate emission inventory data or find previously unknown emission sources.

Tenta allows (1.) to collect measurements of sensor networks remotely. This is not just a "nice-to-have", but a requirement for mid to large sensor networks. The sensor network that Tenta powers at our research group is deployed on rooftops that are difficult to access. We need remote management for such research, as regular physical visits would not be possible. Similarly, Tenta can enable research with sensor networks in remote areas. Tenta allows (2.) to configure sensors remotely. This allows us to react to sensor hardware and software failures much faster and thus increases data yield. Furthermore, this functionality allows running experiments while the sensors are in the field. The fact that Tenta links configurations with measurements leads to highly reproducible datasets.

In our research group Tenta thus "supports the functioning of research instruments or the execution of research experiments" (from JOSS's documentation: "What we mean by research software"). There is similar research to our CO2 sensor network e.g. cited in the introduction or ICOS Cities, where we believe Tenta can be useful as well.

Our research group has previously published related software in JOSS that is also used to support sensor networks with Pyra: Automated EM27/SUN Greenhouse Gas Measurement Software. I believe that Thing Directory: Simple and lightweight registry of IoT device metadata is another JOSS publication that is very similar to this Tenta paper submission.

I also hope that I can alleviate some concerns about the dashboard: The main contribution is the server with its data processing/storage and MQTT communication with the sensors (this also reflects in the amount of work that went into them: The dashboard was developed in around 2 months, while the server took a year of full time work). The server is useful and usable on its own, the dashboard only provides a nice interface to the REST endpoints. In fact, we ran the server without any dashboard for quite a while ourselves in the beginning. The server is well tested and can easily be run locally, as the test and development scripts automatically spin up PostgreSQL/TimescaleDB and Mosquitto instances via Docker.

Thank you for your consideration.

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kthyng avatar kthyng commented on July 17, 2024

@empicano Thank you, yes, the editors that take a look will see your comments to add to their understanding of the software.

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kthyng avatar kthyng commented on July 17, 2024

Ok this has passed the editorial review fine!

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kthyng avatar kthyng commented on July 17, 2024

I will add it to our waitlist while I find/wait for a relevant editor to have capacity.

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kthyng avatar kthyng commented on July 17, 2024

@faroit Would this be in your wheelhouse at all?

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kthyng avatar kthyng commented on July 17, 2024

@editorialbot invite @faroit as editor

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editorialbot avatar editorialbot commented on July 17, 2024

Invitation to edit this submission sent!

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empicano avatar empicano commented on July 17, 2024

Ok this has passed the editorial review fine!

That's great to hear! Thank you for your efforts.

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faroit avatar faroit commented on July 17, 2024

@kthyng I thoroughly checked the submission but I have to say that, unfortunately, I'm not comfortable editing this. It's neither in my scientific domain nor am I up-to-date in web app dev.

If there is absolutely no one else available I could do it but not starting before mid-August.

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kthyng avatar kthyng commented on July 17, 2024

@faroit Ok thanks for the check and the note; I'll see who else I can find in the meantime.

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kthyng avatar kthyng commented on July 17, 2024

@galessiorob Hi! Could you edit this submission?

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kthyng avatar kthyng commented on July 17, 2024

@editorialbot invite @galessiorob as editor

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editorialbot avatar editorialbot commented on July 17, 2024

Invitation to edit this submission sent!

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