Related Issues (18)
- implement MultiQC in ngsqc pipeline
- enforce submitting master job to slurm
- Seperate trimmed fastqc and fastqc from multiqc report HOT 1
- Transfer from pip packaging into git module type packaging HOT 1
- Add support for single end sequencing
- Add support bclconvert HOT 1
- Update to latest version of multiqc
- Kaiju: create Genus, Family, Order, Class output files
- Add cryptographic checksums for fastq.gz files
- Add option to run disambiguate or separate reads from two organisms (i.e. host vs. virus or host vs. parasite) HOT 2
- Documentation
- Ensure name transition from Dmux to weave
- Alternative KRAKEN/KAIJU databases from command line
- Downloading disambiguate reference files and alternative solutions
- Rename --pretend flag
- Move node configurations to serializable file
- Up file latency wait time to 120s
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