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1000genomes_data_indexes

The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource

191026_dtu_pri_mets

atlantis

An Attractor Landscape Analysis Toolbox for Cell Fate Discovery and Reprogramming

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-biological-visualizations

A list of web-based interactive biological data visualizations.

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

awesome-multi-omics

List of software packages for multi-omics analysis

biotools

A list of useful bioinformatics resources

brca_methylshiny

cancer_notes

A continually expanding collection of cancer genomics notes and data

deconvolution-methods

Deconvolution of Bulk RNAseq

ehr_project

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

git_cheatsheet

heterogeneity

Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

hmftools

Various algorithms for analysing genomics data

jamaoncology_2016

Reproduce figures from doi:10.1001/jamaoncol.2016.5630, Intrinsic Subtype Switching and Acquired ERBB2/HER2 Amplifications and Mutations in Breast Cancer Brain Metastases, Adrian Lee Lab

learn-regex

Learn regex the easy way

mdlc_spatial_analysis_2023

mirna_hallmarks_of_cancer

Source code and gene signature data files for miRNA and hallmarks of cancer paper

oncokb-annotator

Annotates variants in MAF with OncoKB annotation.

powsimr

Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.

turkish-bc-study

Analysis of Turkish BC samples after sequencing with Mammaseq

useful-functions