Comments (3)
Hi @MostafaYA,
thanks for reaching out. Indeed, they've become quite old. I'll put an update on my ToDo and try to address this ASAP.
from referenceseeker.
@MostafaYA I just finished and published a new version of the RS database: https://doi.org/10.5281/zenodo.10488564
Due to the Zenodo standard storage quota, I couldn't upload the GTDB bacteria part, if this is of interest, I'll figure out how to provide it, as well.
from referenceseeker.
Thanks !!
from referenceseeker.
Related Issues (20)
- Add internal checks during custom db creation
- Debugging output with "base dir" and "share dir" HOT 1
- [BUG] IndexError: list index out of range HOT 1
- Provide prebuilt GTDB databases
- Reduce DB sizes
- Pre-built databases for other RefSeq sections HOT 2
- <NA/> is being added to the start of file path HOT 4
- ERROR: database file (db.tsv) not readable! on custom database HOT 3
- Seemingly successful ReferenceSeeker run with no results. HOT 8
- [Question] Using ReferenceSeeker to cluster draft fungal genomes HOT 10
- ReferenceSeeker and Metagenome-Assembled Genomes HOT 2
- Add a sliding window parameter for the DNA fragment creation
- [BUG] I can't make a custom db with referenceseeker_db init HOT 2
- Finding a suitable reference for a set of genomes HOT 3
- no conda install for Apple Silicon HOT 1
- GTDB last update HOT 6
- Feature request: ability to include private data HOT 3
- [BUG] Updating database script errors HOT 2
- Empty results for a custom built DB HOT 3
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from referenceseeker.