Comments (4)
Hi Ren-Gang,
The installation first creates the "EDTA" env (conda create -n EDTA
) then activate it. The following conda install
will be installed in the EDTA env. Do you mean it was not automatically installed in the EDTA env under Miniconda2 4.4.10
?
Best,
Shujun
from edta.
@oushujun, yes, it is automatically installed in base
. It might be beacuse conda activate EDTA
failed but I ignored it. Thank you.
from edta.
I see. I have add -n EDTA
to each conda install
line. This will be reflected in the next update. Thanks for your suggestion and sorry for the inconvenience.
Shujun
from edta.
Thank you.
from edta.
Related Issues (20)
- ERROR:EDTA.pl line 583 HOT 5
- TIR-Learner does not run properly in EDTA v2.2.0 HOT 11
- LTR retriever fails HOT 5
- LINE search takes much longer compared to other steps HOT 3
- resubmit jobs HOT 1
- Rerun EDTA 2.2.0 with results from older version HOT 8
- PanEDTA Line Detection HOT 7
- 2024-01-30 02:12:48,620 -WARNING- Grid computing is not available because DRMAA not configured properly: HOT 1
- TIR filtration HOT 3
- EDTA crahed after no SINE found HOT 11
- Benefit of using panEDTA HOT 1
- Testing output HOT 4
- EDTA_2.2.x.yml seems not working HOT 7
- Concatinating CDS files for panEDTA HOT 1
- making the output gff3 valid HOT 4
- Exploring the Discrepancies between TEanno.gff3 and TElib.fa HOT 2
- Inflated TE counts and masked bp in EDTA annotation after removal of part of the genome HOT 3
- panEDTA for metazoans HOT 5
- the pipeline about panEDTA HOT 6
- Two genomes LTR result file has 0 bp, while the others are not. HOT 3
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from edta.