Comments (2)
Dear Fuyou,
You must be using a very standardized dataset. Your results are super good! The misclassification rate is even lower than the curated library (0.1%-2%).
To answer your question, no EDTA does not have the functionality to identify low complexity sequences or tandem repeats. You may use RepeatMasker to do so.
Best,
Shujun
from edta.
Thanks.
Fuyou
from edta.
Related Issues (20)
- dependencies not found in singularity install HOT 4
- Would you consider adding -w $genome_file_real_path.EDTA.raw/TIR to line 576 of EDTA_raw.pl HOT 1
- Can't locate SearchResult.pm in @INC (you may need to install the SearchResult module) HOT 3
- Hey!Have you solved your problem? I had the same problem. HOT 1
- I just found that this script in the (../../share/RepeatMasker/) folder will not have this error, maybe can copy the input file, I think it can try?If you tried, can you tell me the result? HOT 3
- TIR not found? HOT 1
- 文件缺失 HOT 1
- Stuck by BLAST in LTR finding HOT 2
- PanEDTA test output
- [No LINE, EDTA 2.2.0] Empty LINE file after RM2
- LINE and SINE results files has 0 bp!
- ERROR: TE annotation stats results not found in B.purpurea.fasta.mod.EDTA.TE.fa.stat! HOT 1
- '调用失败' HOT 8
- Statistical genome size
- solve '*.mod.EDTA.TEanno.sum' empty HOT 5
- Unusual Output and Failure During Regular Annotation
- TE_XXX in gff3 from panEDTA
- panEDTA timing out on large genomes HOT 2
- For the RepeatModeler step why throw logs to 2>null?
- Using CDS from multiple species
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from edta.