oxfordmmm Goto Github PK
Name: Oxford MMM
Type: Organization
Bio: Modernising Medical Microbiology
Location: University of Oxford
Name: Oxford MMM
Type: Organization
Bio: Modernising Medical Microbiology
Location: University of Oxford
A Jupyter notebook to demonstrate usage of piezo, gumpy and gnomonicus with different AMR catalogues
Apply mask to fasta file
Updated BovTB-nf (https://github.com/ellisrichardj/BovTB-nf) with docker function
Documentation for Scalable Pathogen Pipeline Platform (SP3)
Command client of SP3 for fetch, run and download.
pre-processing and upload module for SP3
CRyPTIC data processing pipelines
Copied from https://github.com/RSE-Sheffield/collaborative_github_exercise with thanks!
A compact version of Oxford Compass (Complete Pathogen Analysis Software Solution)
Gene-flank analysis tool
SNP matrix generation with caching to disk to allow fast reloading
Using random forest classfiers to filter SNP calls
Scripts for "Genomic diversity affects the accuracy of bacterial SNP calling pipelines"
Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants
Automated end-to-end testing of the GPAS TB pipeline
GPAS Autonomous Database
For downloading ENA samples and making them available to the GPAS pipeline
Database to hosted locally in the hospital, holding GPAS sourced data plus others
Re-implementation of gumpy in rust for speed
Genetics with numpy
Simple tutorial using a jupyter notebook to walkthrough how to use gumpy
The backend files for the LabBox application
The front-end for the LabBox application
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.