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agfusion

Python package to annotate and visualize gene fusions.

battleship

cosmos

Workflow Management System (HMS)

cosmos2

Python Scientific Pipeline Management System

daizy

social network video aggregator for passive viewing pleasure

darkstripes

Octopress theme used on melandri.net

dash

nycedu project

ddm_book_tutorials

Tutorials for the DDM QuantBio Book

docker-jenkins-dind

Generic Jenkins CI with Docker Engine and Docker Compose inside

docker-mariadb-alpine

docker mariadb using alpine

dotfiles

:wrench: .files, including ~/.osx — sensible hacker defaults for OS X

ensembl-docker

Ensembl Dockers, APIs, DB

flask-mongoengine

MongoEngine flask extension with WTF model forms support

foxslide

a jekyll/octopress theme which incorporates bootstrap, html5boilerplate, SEO practices, and a strong hero.

funda

exercises and riffage on cs fundamentals

garcon

Library for AWS SWF

golang

Docker Official Image packaging for golang

kitchenplan

Kitchenplan is a small tool to fully automate the installation and configuration of an OSX workstation (or server for that matter) using Chef. But while doing so manually is not a trivial undertaking, Kitchenplan has abstracted away all the hard parts.

lastfm

mac_os-config

Shell scripts for customized macOS machine setup and configuration.

mutalyzer

HGVS variant nomenclature checker

mutt-colors-solarized

mutt mail client color schemes

octopress

Octopress is an obsessively designed framework for Jekyll blogging. It’s easy to configure and easy to deploy. Sweet huh?

phys2ddm

Fork of ES_APPM_395 S24 course repository.

pydantic

Data parsing and validation using Python type hints

react-vega

Convert Vega spec into React class conveniently

routes

Routes is a Python URL recognition and generation system similar to the Rails routing system. Routes makes it easy to create pretty and concise URL's that are RESTful with little effort.

scalding-tutorial

The Scalding tutorial as a standalone SBT project

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

sorl-thumbnail

A fork to hack some reflection effect processing into this great lib.