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accession-commons

Generic service for accessioning of any type of object

bds

bigdatascript

BigDataScript: Scripting language for big data

biodata

Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics

bioinfo-libs

C library with bioinformatic formats parser and aligners

cellbase

High-Performance NoSQL database and RESTful web services to access to most relevant biological data

cellbasespeciesjsontoproperties

Python script used to transform the 'species.json' file from cellbase genome-fetcher to a properties file

colorspacetools

Some scripts to do some "Solid ColorSpace" reads testing

common-libs

C library with common utilities

comparadorvariationjsonfiles

Una herramienta simple en python para comparar dos json generados por "cellbase --build variation"

dump-dbsnp-example-variants

Script for dumping all the data related to an rs to be used in the dbsnp importer project tests

edukit2

CamJam EduKit 2 - Sensors

eva-accession

EVA non-human variant accessioning service

eva-cttv-pipeline

Python package which queries CellBase REST web services to generate CTTV evidence strings

eva-omicsdi-export

Tool for exporting EVA data and metadata in a format compatible with the Omics Discovery Index (http://www.omicsdi.org/)

eva-pipeline

Genomic variation pipeline for the European Variation Archive, implemented using Spring Batch

eva-tools

Tools compatible with the infrastructure of the European Variation Archive pipeline

eva-v2

Next-generation European Variation Archive (WIP)

eva-web

Web front-end for the European Variation Archive

eva-ws

European Variation Archive

evapopulationfrequenciesfetcher

Python script used to get population frequencies from eva data stored in opencga

hpg-aligner

HPG Aligner is high-performance and highly sensitive NGS aligner. Both DNA and RNA-seq modes are implemented http://wiki.opencb.org/projects/hpg/doku.php?id=aligner:overview

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

human-data-local-ega

Local EGA

java-common-libs

OpenCB common libs project

loadertest

Small project to test some ideas that could be used in Cellbase loaders

mutalyzerwsclient

Java Client for Mutalyzer WebService

ngb

New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support

opencga

Cloud-based environment for big data processing and analysis

posa-14

This repository contains assignments and examples for the 2014 offering of the POSA MOOC (see www.coursera.org/course/posa for more information)