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autograd

Efficiently computes derivatives of numpy code.

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

bioc-refcard

Bioconductor cheat sheet

bioc2016eda

bioc2017_tcga_gtex_bof

This repository contains a brief outline for a 'Birds-of-Feather' (BOF) session to meet and discuss analyzing publicly available cancer data from TCGA & GTEx

cellcnn

Representation Learning for detection of phenotype-associated cell subsets

convnetjs

Deep Learning in Javascript. Train Convolutional Neural Networks (or ordinary ones) in your browser.

cytofworkflow.bioc2017workshop

d3heatmap

A D3.js-based heatmap htmlwidget for R

deviumweb

Interactive multivariate data analysis in R implemented in shiny.

fadapa

FAstqc DAta PArser - A minimal parser to parse FastQC output data.

genomics

A collection of scripts and notes related to genomics and bioinformatics

googleanalytics

Shiny application to query Google Analytics data

hypergrad

Exploring differentiation with respect to hyperparameters

illuminati

scripts to automate illumina secondary analysis pipeline

labs

Scripts for HarvardX courses: PH525x

longreadbigwig

mincemeatpy

Lightweight MapReduce in python

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

networkd3

Tools for creating D3 JavaScript network graphs from R

neuralnetworks

java deep learning algorithms and deep neural networks with gpu acceleration

padog

Pathway Analysis with Down-weighting of Overlapping Genes

polyester

Bioconductor package "polyester", devel version. RNA-seq read simulator.

py12306

12306.cn Python 订票程序

pytorch-gat

My implementation of the original GAT paper (Veličković et al.). I've additionally included the playground.py file for visualizing the Cora dataset, GAT embeddings, an attention mechanism, and entropy histograms. I've supported both Cora (transductive) and PPI (inductive) examples!

restfulse

demonstration of SummarizedExperiment with assay component retrieved from remote HDF5 server

spia

Signaling Pathway Impact Analysis using combined evidence of pathway over-representation and unusual signaling perturbations

testcapecod

theano-rnn

Demonstration of recurrent neural network implemented with Theano

theano-tutorials

Bare bones introduction to machine learning from linear regression to convolutional neural networks using Theano.