Comments (7)
Hi, which version of PaddlePaddle are you using? To run HelixFold-Single, you need to install PaddlePaddle dev as stated here.
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i have installed dev 0.0.0. CPU version ,but is also "AttributeError: module 'paddle.fluid.core_avx.eager.ops' has no attribute 'fused_gate_attention", it must install 0.0.0 GPU version?
i have installed dev 0.0.0. CPU version ,but is also "AttributeError: module 'paddle.fluid.core_avx.eager.ops' has no attribute 'fused_gate_attention", it must install 0.0.0 GPU version?
from paddlehelix.
Yes, fused_gate_attention
only support GPU version so far. As for the CPU version, we will contact PaddlePaddle team about this issue.
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Any way to speed up this command?
pip install paddlepaddle-gpu==0.0.0.post112 -f https://www.paddlepaddle.org.cn/whl/linux/gpu/develop.html
I'm interested in developing a Google Colab notebook for helixfold-single and it appears a dev version installation is required for fused_gate_attention
.
Unfortunately, it took over 30 minutes... :(
from paddlehelix.
Any way to speed up this command?
pip install paddlepaddle-gpu==0.0.0.post112 -f https://www.paddlepaddle.org.cn/whl/linux/gpu/develop.htmlI'm interested in developing a Google Colab notebook for helixfold-single and it appears a dev version installation is required for
fused_gate_attention
.Unfortunately, it took over 30 minutes... :(
Sorry, this seems to be an issue of PaddlePaddle Installation page... An alternative is to directly visit this link and download the xxx.whl file to the Colab (choose the correct xxx.whl according to your environment), and then use the following command to install:
pip install xxx.whl
from paddlehelix.
Yes,
fused_gate_attention
only support GPU version so far. As for the CPU version, we will contact PaddlePaddle team about this issue.
这个问题解决了吗?现在cpu版本能使用吗fused_gate_attention这个函数吗?
from paddlehelix.
Yes,
fused_gate_attention
only support GPU version so far. As for the CPU version, we will contact PaddlePaddle team about this issue.这个问题解决了吗?现在cpu版本能使用吗fused_gate_attention这个函数吗?
你好,框架方面还没给出排期,我们也在跟进中,感谢您持续关注。
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Related Issues (20)
- Get Embedding Layer HOT 2
- Could you please provide the CASP14 test set which you evaluated on? HOT 2
- GEM pretrain model. HOT 1
- GEM does't work HOT 2
- 在使用paddlehelix安装时,sh scripts/build.sh,会出现make: *** makefile。 停止。的错误
- 使用命令 pip install --upgrade git+https~ 时候会出现sklearn is depreciation use scikit-learn instead
- when will Code for "Multimodal Pre-Training Model for Sequence-based Prediction of Protein-Protein Interaction" be released?
- Encountered ImportError when using HelixFold-Single. HOT 1
- 运行JTVAE的代码,preprocess没有问题,训练代码报错,使用的是你们官方提供的数据集 HOT 1
- how to inference with DCU
- ask for the generation of processed.pkl in the geomGCL HOT 1
- 运行tutorial的时候出现与cuda有关的error HOT 1
- 权重
- Get distogram prediction from Helix-single
- paddlehelix安装问题 HOT 4
- 加载GEM pretrain model提示模型shape和权重shape不一致 HOT 1
- 运行脚本train_cls.py报错:AttributeError: type object 'paddle.fluid.libpaddle.VarBase' has no attribute '__getitem__'
- 运行脚本train_cls.py报错,AttributeError: type object 'paddle.fluid.libpaddle.VarBase' has no attribute '__getitem__'
- 运行helixfold-single-inference.py 报错 HOT 1
- pip install paddlehelix报错 HOT 2
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