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jvwong avatar jvwong commented on June 27, 2024

Entity type

When it comes to integrating with factoid model, it's important to assign some sort of 'type' to a Famplex entity. To attempt this, will we use the Famplex provided relations.csv containing:

  • entities (describing complexes and families)
  • (directed) relationships ('isa' and 'partof') between entities

A first attempt is to follow a simple heuristic: A complex namedComplex is an entity that has some other entity that is partof it. Otherwise, it is a family.


Example below for "AMPK":

AMPK

from grounding-search.

jvwong avatar jvwong commented on June 27, 2024

Turning this into an itemized issue, to stage the changes and reduce risk (in particular, changes in factoid):

  • Add grounding-search as datasource (including tests), but do not expose in aggregate search
  • Add Famplex entities of type family
  • Add Famplex entities of type complex namedComplex

from grounding-search.

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