Related Issues (20)
- Fix hictk dump -t bins when file is in .scool format
- No build for Mac found via mamba/conda - Mac installation fails. HOT 4
- Add --no-create-weight-link flag to hictk balance subcommands
- [bug] hictk dump should raise an exception when weights are not found in .hic file
- [feature] Implement hictk metadata subcommand
- [feature] convert read_dense()/read_sparse() methods to transformers
- [feature] support reading/writing .hic files on big-endian platforms HOT 1
- [feature] support query mirroring when fetching interactions as sparse matrix
- [feature] support query mirroring when fetching interactions as arrow::Table
- Error creating All:All matrix HOT 3
- [feature] transformers::ToDataFrame(): support iterating over dataframe in chunks
- how to load HOT 1
- How to load the converted .hic file into Juicerbox HOT 6
- Using Apptainer/Singularity gives `FAILURE! hictk encountered the following error: filesystem error: temp_directory_path: No such file or directory` HOT 4
- [feature] support extracting resolution from multi-resolution files
- [feature] support extracting individual cells from single-cell files
- [ci] run integration tests as part of Windows CI
- [ci] run the extended CI pipeline before tagging the next release
- [testing] rewrite integration tests using python
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