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bedtools-python

A Python interface to the BEDTools API using Cython

bioconda-recipes

Conda recipes for the bioconda channel.

blockclust

blockclust_predictions

chira

Chimeric Read Annotator

container-galaxy-sc-tertiary

Galaxy container for single cell RNA-Seq tertiary analysis tools

deeptools

Tools to process and analyze deep sequencing data.

galaxy

Data intensive science for everyone.

galaxy-hub

Galaxy Community Hub

galaxy-rna-workbench

Galaxy RNA workbench

galaxytools

Galaxy Tool wrappers

galaxytools-1

git_workshop

GIT tutorial

github_tutorial

This is a test repository for your workshop

gxadmin

Handy command line utility for Galaxy administrators :rocket:

hicexplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

infrastructure-playbook

Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/

mimosca

A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.

multi-package-containers

Testing building mulled containers for multi-requirement tools.

planemo

Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.

rdmkit_sc

ELIXIR Data Management Toolkit - Find the answers to your research data management questions here.

tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission

tpv-shared-database

A shared database of rules for Total Perspective Vortex used by the usegalaxy.* federation.

training-material

A collection of training material from offered Galaxy courses

usegalaxy-eu-tools

List of tools included in https://usegalaxy.eu

usegalaxy-tools

usegalaxy.* common tools

website

UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)

workflow-testing

Automated testing of workflows against UseGalaxy.eu