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2019_replication_hastingspowell_1991

2019 Replication of Hastings & Powell (1991) Chaos in a Three-Species Food Chain

aos_sco_2021_moult_models

Slides for my #2021AOS_SCO talk on modelling avian moult phenology in R

bayeslmmtutorial

Tutorial files to accompany Sorensen, Hohenstein, and Vasishth paper: http://www.ling.uni-potsdam.de/~vasishth/statistics/BayesLMMs.html

cesr

Tools to analyse EuroCES data

citizen_science_value

An example of how value could be calculated for a given Biodiversity Sampling Event (BSE)

cowsay

cowsay w/ more animals, in R

dataorg

Tutorial on organizing data in spreadsheets.

deb_inference_manuscript

Code and data for Boersch-Supan & Johnson (2019): Two case studies detailing Bayesian parameter inference for dynamic energy budget models.

debinfer

Bayesian inference for dynamical models of biological systems in R

debtool_m

DEBtool - package of DEB functions for Matlab

debutilities

Utility functions for Dynamic Energy Budget models

docs

Documentation for the Stan language and CmdStan

dopcalc

GPS constellation and dilution of precision calculations from almanac data

ecologicalfunctions

Some ecological functions, grouped mathematically and adapted from B. Bolker 2008, Ecological Models and Data in R

ewp

EWP regression models for underdispersed count data

example-models

Example models for Stan

genier

Inference of demographic history from phylogeny

ggeffects

Tidy Data Frames of Marginal Effects for ggplot2

giles-eco-docker

gratia

ggplot-based graphics and useful functions for GAMs fitted using the mgcv package

hytool

Hytool is a matlab toolbox for the interpretation of hydraulic tests in wells. The toolbox contains analytical solutions used to describe groundwater flow around wells, and functions for importing, displaying, and fitting a model to the data.

isec_stan_course

A 6 hour course on Stan with Dan Simpson, Vianey Leos-Barajas, and Andrew MacDonald

joss

The Journal of Open Source Software

landing-page-theme

Jekyll Bootstrap theme

meta_debinfer

Misc. tests and benchmarks for debinfer

moult

Fork of the CRAN R package repository for "moult — Models for Analysing Moult in Birds " with some patches

moult_phenology

Code for simulation studies and analyses for the manuscript "Extended molt phenology models improve inferences about molt duration and timing"

moultcirc

Circular regression models for moult data

moultmcmc

Bayesian inference for models of moult.

moultmcmcextra

bits and bobs that are not (yet) in the narrower scope of moultmcmc