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annotationchooser

ansible-galaxy

An Ansible role for managing a Galaxy server

ansible-galaxy-extras

Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.

ansible-gie-proxy

Ansible Role for setting up the Node.js proxy for Galaxy Interactive Environments/Tools

ansible-role-supervisor

Ansible Role - Supervisor

ansible-role-zookeeper

Ansible role to install Apache Zookeeper

atlas-baseline-batch-effect-correction

Pipeline for batch effect correction in Baseline experiments proposed by Guillaume HEGER, trainee in Gene Expression Team, EMBL-EBI in 2019

awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

binche

Enrichment analysis of molecular structures based on the ChEBI ontology

binche-core

BiNChE - ChEBI based enrichment analysis of small molecule collections.

bincheweb

A dynamic web project that performs enrichment analysis based on ChEBI ontology

bioblend

A Python library for interacting with CloudMan and Galaxy API

biohackathon

Hackathon & Training

cdk

The Chemistry Development Kit

cellbrowser

Python pipeline and Javascript scatter plot library for single-cell datasets

cellprofiler

CellProfiler is open-source cellular image analysis software.

celltypist

A tool for semi-automatic cell type classification

charts

Curated applications for Kubernetes

cloud-deploy-kn-cerebellin-g-stable

Cloud deploy kubenow snapshot for Cerebellin

cloud-deploy-other-app

This repository contains scripts to manage the PhenoMeNal cloud CRE.

cm2017

conda-forge-pinning-feedstock

A conda-smithy repository for conda-forge-pinning.

container-galaxy-k8s-runtime

First version of a PhenoMeNal runtime for Galaxy running inside a container orchestrator

container-testing-midcor

containers-rules-manuscript

Manuscript about Ten simple rules to contenarized your bioinformatics software

data-portal

data-portal-content

Markdown, images, PDFs, and similar content for HCA Data Portal

data_manager_fetch_gff

Galaxy Data Manager to fetch gene annotation files

decoupler-py

Python package to infer biological activities from omics data using a collection of methods.

docker-batman