Code for paper published in March, 2017 analysing the role of de novo mutations in severe developmental disorders (part of the deciphering developmental disorders project).

eagle

Haplotype phasing software

gnome-shell-extensions

Various extensions for the gnome-shell

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

htslib

C library for high-throughput sequencing data formats

ips-seq

matplotlib

matplotlib: plotting with Python

mpileup-tests

Test cases for mpileup variant calling

ngs-vm

Automation of the IT infrastructure for the NGS course

optimap

Optical mapping

pbwt

Implementation of Positional Burrows-Wheeler Transform for genetic data

pd3.github.io

samtools

statsview

utils

Random utilities

variant_calling

vg

tools for working with variation graphs

www.htslib.org

The http://www.htslib.org/ web site

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