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2022-tatlanticus_popgen

Repository associated with the publication: Weak range-wide population structure in the blackfin tuna (Thunnus atlanticus) revealed by analysis of genome-wide SNPs

bio-bin

Handy reusable bioinformatic scripts

bioconda-recipes

Conda recipes for the bioconda channel.

c.acronotus-data-2019

SNP dataset associated with Dimens et al. 2019 "A genomic assessment of movement and gene flow around the South Florida vicariance zone in the migratory coastal blacknose shark, Carcharhinus acronotus"

ddocent

a bash pipeline for RAD sequencing

filter_trs_filters

gust

An easy breezy whole-genome derived snp-based phylogenetic pipeline 🌪️

harpy

Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.

lepwrap

A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.

pdimens.github.io

Personal website

popgensims.jl

Create population genetics simulations

rad_haplotyper

shortle

A Pretty Ok Short-Read Assembly Workflow

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

tidier.jl

100% Julia implementation of the R tidyverse mini-language

tidiercats.jl

100% Julia implementation of the forcats R package

tidierdata.jl

100% Julia implementation of the dplyr and tidyr R packages

tidierdates.jl

100% Julia implementation of the lubridate R package

tidierdb.jl

Tidier database analysis in Julia, modeled after the dbplyr R package.

tidierfiles.jl

Tidier file reading and writing in Julia, modeled after the readr and haven R packages.

tidieriteration.jl

Tidier iteration over collections in Julia, modeled after the purrr R package.

tidierplots.jl

100% Julia implementation of the ggplot2 R package

tidierstrings.jl

100% Julia implementation of the stringr R package

tidiervest.jl

100% Julia implementation of the rvest package