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1d_omz_model

bec2-microbes

Biogeochemical modifications to the BEC2 biogeochemical model as part of the Regional Ocean Modelling System.

c1d_pisces_bac

implementation of bacterial populations in the PISCES biogeochemical model (1D water column version)

cmip6_hackathon

code created during the CMIP6 Hack-a-thon in the UK

coal

Biogeochemical Model Development

extract_from_curvilinear_nemo_grid

Code and example for extracting point location-time data from output of the NEMO-PISCES ocean-biogeochemical model, of which the raw output is on a curvilinear grid, such that point data extraction is non-trivial

marine-nitrogen-fixers-paper-python-code

Python code for plotting figures 1 through 4 in Buchanan et al., (2019) Marine nitrogen fixers mediate a low latitude pathway for atmospheric CO2 drawdown. Nature Communications.

microbial_chemostat_model

mode_water_formation_calcs

Scripts (ferret and python) for calculating the formations (subduction/obduction) rates of mode waters in the Southern Ocean. Additional work is included that calculates the contribution of nitrification to nitrate transport within these water masses.

nh4_enrichment_scripts

Python and R code for undertaking analysis in "Enrichment of ammonium in the future ocean threatens diatom productivity" by Buchanan et al. (submitted)

orca2_ice_piscesiso

Isotopic routines for nitrogen and carbon in PISCES biogeochemical model with online physics

orca2_off_piscesiso

Isotopic routines for nitrogen and carbon in PISCES biogeochemical model

orca2_off_piscesiso-n

Code for the isotope enabled PISCES-v2 with additions to N cycling

oxygensupplydemand_grl

scripts and data required for analysis in submission to Geophysical Research Letters

piscesiso_ncycle_analysis

Scripts required to reproduce analysis and figures of "The isotopic fingerprint of declining ocean net primary production"

predicting_biomolecular_composition

Scripts and data to predict the biomolecular composition of marine phytoplankton and their stoichiometry using key environmental properties (temp, nutrients, light, etc.)

pywombat

Water column version of the WOMBAT biogeochemical ocean model written in python

rafter2019-neural-network-d15nno3-netcdf-file

Code to turn Rafter et al (2019) Biogeosciences nitrogen isotope of nitrate data (d15N of NO3) into a 3D gridded netcdf file

woa-analysis

wombat_dev

developments of the WOMBAT biogeochemical model within ACCESS-OM2