Comments (2)
The Big WHY?
We are building AMI so that:
Type of User: Researchers working in various domain of subject area______________________
can: mine the literature corpus_____________
without: much skills and efforts required for TDM or NLP. _________
Goals:
Describe the Challenge, the solution we will bring, and the Desired End State by which all will know we have achieved excellence.
- A. Foremost addressed challenge in TDM is accuracy of literature search and extraction of information.
- B. Automated tool to download scientific articles, building dictionaries for search terms and performing query search.
- C. CProject of downloaded articles and cooccurrence of search terms ( results as per each paper and entire corpus).
Desired Results:
A clear and concise description / outline of the final "state or vision" of the project — the evidence we will see when our goals are achieved.
- A. Accurate article downloaded for the search terms (XML, html, pdf, scholarly html).
- B. Wikifactmine dictionaries.
- C. Cooccurrence of search terms.
Guiding principles:
What principles will guide our decisions as we do our part to fulfill the mission?
- A. Consistency.
- B. Collective effort.
- C. Daily accomplishment of set goal.
Massive Action Steps:
What massive actions will generate the Desired Results?
- A. Strategy to mine the desired task.
- B. Accurate dictionaries.
- C. Compilation of search results.
Responsibilities and Roles:
_Who will have what completed when?_testing of AMI, installation, dictionary building and running AMI search tool.
Interim Deliverable #1:
- Milestone: Testing AMI.
- Milestone Date:
- Single Individual Responsible for ensuring this Milestone is reached on time: Me.
Interim Deliverable #2
- Milestone: Installation and running on various platforms.
- Milestone Date:
- Single Individual Responsible for ensuring this Milestone is reached on time: Me.
Tips, Tools, Shortcuts and Resources:
Anything done or used to make the desired outcome more likely to occur.
- A. GitHub.
- B. Google hangout.
- C. Google drive.
Rules and Responsibilities for Achieving Excellence
Always:
- A. Consistent and sincere efforts.
- B. Desire to learn new.
- C.
Never:
- A. Underestimate the importance of work.
- B.
- C.
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Related Issues (20)
- 📕 Documentation: Dictionary.xml and DictionaryDescription.md of: eoPlantMaterialHistory HOT 18
- 📕 Documentation: Dictionary.xml and DictionaryDescription.md of: geoLocation HOT 3
- 📕 Documentation: Dictionary.xml and DictionaryDescription.md of: eoPlantPart HOT 5
- 📕 Documentation: Dictionary.xml and DictionaryDescription.md of: eoPlant HOT 3
- 📕 Documentation: Dictionary.xml and DictionaryDescription.md of: pests HOT 1
- GREP query construction HOT 2
- Dictionary Validation — Beyond Synonyms: Hyphens and Suffixes and Layman Terms, oh my!
- 📕 Documentation: Dictionary.xml and DictionaryDescription.md of: eoActivityAgents
- Cannot clone the repository
- could not create full data table HOT 2
- Error in search_lib
- Missing: Compounds with greek letters HOT 1
- AltLabel with different delimiter HOT 1
- Requesting help with Uniprot SPARQL Query to retrieve Synonyms, Protein names HOT 2
- Error while doing ami_gui.py
- Duplicates of images and synonyms entries added by the software
- Problem with dictionary creation using text file and amidict command
- Requirement for "excel table to ami readable xml" converter
- Tasks 2022
- Table Normalization and Data Extraction
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