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cellexplorer

CellExplorer is a graphical user interface (GUI) and standardized pipeline for exploring and characterizing single cells acquired with extracellular electrodes

class-decoding

Supervised and unsupervised techniques to decode signals from a population of neurons: the case of head-direction cells.

intandataprocessing

Process raw Intan data and launch spike sorting

ipn-workshop-extracellular-recordings

Resources for the 2021 IPN workshop on extracellular recordings

kilosortwrapper

mehrotralevenstein_2023

miniscopescripts

Matlab functions for analysing miniscope data

miniscopy

A package to analyse calcium imaging data recorded with the Miniscope.

neuroboostedtrees

Resolving neuronal population code and coordination with gradient boosted trees. Preprint available on bioRxiv.

neuroseries

pynacollada

pynapple collaborative data analysis (high level python scripts) :tropical_drink:

pynapple

PYthon Neural Analysis Package :pineapple:

pynapples-on-fire

Context manager for parallel computing with pynapple.

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

starterpack

Tutorial

thalamusphysio

Sharp-waves ripples analysis in thalamus

tstoolbox

A Matlab Toolbox to analyze neuronal data

tstoolbox_utils

Scripts for neuronal and behavorial data analysis, sometimes depending on the TSToolbox.

tutorial_hdplacecells_analysis

A course given at the 2017 Canadian Neuroscience meeting, Neural Signal Analysis Satellite.