Related Issues (12)
- Make pipeline work on Illumina gzipped fastq files
- Add Nanopore Dehosting HOT 1
- Reformat Nanopore Host Removal Codeblock HOT 1
- Empty nanopore fastq files cause fast5 regeneration to fail minimap2 HOT 1
- Keep Full Fastq Read Identifiers [ Nanopore Minimap2 ]
- Flat Output Option [ Nanopore Minimap2] HOT 1
- Better Fastq Filtering [ Nanopore Minimap2 ] HOT 1
- not working regenerateFastqFiles. HOT 1
- Docs update, Flow update, and Help statement update
- Add optional downsampleing with seqtk
- pysam update causes issues HOT 3
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