phildong Goto Github PK
Type: User
phildong's Projects
auto_broadway
automatic script for broadway direct lottery
behaviortracking
This repository contains iPython files that can be used to score an animal's motion, location, and freezing while in any number of arenas.
caiman
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
csdigest
CaiShuman Group Newsletter
eztrack
isovis
a simple tool to visualize 3d scatter of neural activities together with behavior recordings
miniscope-daq-qt-software
Software for streaming and controlling neural and behavioral data from freely behaving animals
predictioncode
This repository contains code and visualizations needed to reproduce the results presented in Hallinen et al, "Decoding locomotion from population neural activity in moving C. elegans," eLife, 2021.
proposal
thesis proposal
rootstock
Clone me to create your Manubot manuscript
swdb_2018_tools
A collaborative Python package built by participants of the Summer Workshop on the Dynamic Brain
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