asl-docs

Documentation for ASL tools (BASIL, oxford_asl, etc)

asl_mfree

Model-free deconvolution for multi-TE ASL data

asl_practical

ASL practical for the FSL course

asl_primer

ASL primer exercises as made available via the Primer website (hosted on FMRIB webserver)

azure-vms

Module capturing scripts used for creating virtual machines in Azure for online courses

basil

Script to run kinetic modelling on PASL/pCASL data using Fabber

basil-qmenta

Code to define a Docker container that can be used to run Basil within the QMENTA platform

basil_xnat

XNAT plugin to support running Basil tools on data in XNAT

dcm_convert_phillips

Custom script to convert ASL DICOM files from Phillips scanners which do not go through DCM2NIIX properly

exploreasl

Developmental version of ExploreASL

fabber-matlab

Matlab wrapper interface for the Fabber Bayesian model fitting tool

fabber_core

Framework for Bayesian model fitting using the Variational Bayes method and pluggable forward models

fabber_models_asl

Forward models using the Fabber framework for Arterial Spin Labelling MRI

fabber_models_cest

CEST model for the Fabber model fitting tool

fabber_models_cvr

Fabber models for cerebrovascular reactivity from BOLD data + PETCO2

fabber_models_dce

DCE models for the Fabber model fitting tool

fabber_models_dsc

DSC models for fabber

fabber_models_dualecho

fabber_models_dwi

Fabber models for diffusion weighted imaging

fabber_models_pet

PET models for the Fabber bayesian model fitting tool

fabber_models_qbold

Fabber models for Quantitative BOLD MRI

fabber_models_t1

Models for generating T1 maps using the Fabber model fitting tool

fslpy

This is a mirror.

hcp-asl

ASL pipeline for the Human Connectome Project

ibme-qubic.github.io

Github Pages for ibme-qubic organization

maskslic

Simple linear iterative clustering (SLIC) in a region of interest (ROI)

nmedia_ml_tutorial

Jupyter notebook based machine learning tutorial for the NMedIA image analysis module

nmedia_vb_tutorial

oxasl

Python based ASL pipeline based on oxford_asl

oxasl_bids